Information

Related Research Units

Intellectual and Developmental Disabilities Research Center Research
Radiology Research
Computational Radiology Laboratory Research

Research Overview

Simon Warfield's research in the field of medical image analysis has focused on methods for quantitative image analysis through novel segmentation and registration approaches, and in real-time and large data image analysis, enabled by high performance computing technology. Algorithms developed by Dr. Warfield have been applied in several domains, including developing an improved understanding of early brain development, understanding the association between white matter lesions and cognitive dysfunction in multiple sclerosis, and in enhancing navigation and visualization during image guided surgery.

Dr. Warfield founded the Computational Radiology Laboratory (CRL) in 2001. The CRL was formed with the mission of improving our understanding of the structure and function of the brain and other organs of the human body, in order to improve our capacity to diagnose and treat disease. Members of the CRL achieve this by developing novel technologies and computational modeling strategies for understanding and interpreting radiological images.

More about Dr. Warfield's research can be found here: http://crl.med.harvard.edu

Research Background

Simon Warfield received his PhD from the School of Computer Science and Engineering of the University of New South Wales, in Sydney, Australia. He completed his post-doctoral training in medical imaging at Harvard Medical School/Brigham and Women's Hospital, Boston, MA.

He is also Director of the Computational Radiology Laboratory situated in the Department of Radiology at Children's Hospital and Site Co-Director for Boston Children's Hospital in the Harvard CTSC Translational Technologies Imaging Consortium.

Publications

  1. Rapid, High-resolution and Distortion-free R2* Mapping of Fetal Brain using Multi-echo Radial FLASH and Model-based Reconstruction. ArXiv. 2025 Jan 07. View Abstract
  2. IVIM-Morph: Motion-compensated quantitative Intra-voxel Incoherent Motion (IVIM) analysis for functional fetal lung maturity assessment from diffusion-weighted MRI data. ArXiv. 2025 Jan 02. View Abstract
  3. White Matter Tract Crossing and Bottleneck Regions in the Fetal Brain. Hum Brain Mapp. 2025 Jan; 46(1):e70132. View Abstract
  4. IVIM-Morph: Motion-compensated quantitative Intra-voxel Incoherent Motion (IVIM) analysis for functional fetal lung maturity assessment from diffusion-weighted MRI data. Med Image Anal. 2024 Dec 31; 101:103445. View Abstract
  5. A detailed spatiotemporal atlas of the white matter tracts for the fetal brain. Proc Natl Acad Sci U S A. 2025 Jan 07; 122(1):e2410341121. View Abstract
  6. Systemically injected oxygen within rapidly dissolving microbubbles improves the outcomes of severe hypoxaemia in swine. Nat Biomed Eng. 2024 Nov; 8(11):1396-1411. View Abstract
  7. Association Between Hip Translation and Hip Rotation and Anatomy: A Pilot Quasi-static MRI Study. Orthop J Sports Med. 2024 Oct; 12(10):23259671241275662. View Abstract
  8. Detailed delineation of the fetal brain in diffusion MRI via multi-task learning. ArXiv. 2024 Sep 12. View Abstract
  9. Detailed delineation of the fetal brain in diffusion MRI via multi-task learning. bioRxiv. 2024 Aug 30. View Abstract
  10. Streamline tractography of the fetal brain in utero with machine learning. ArXiv. 2024 Aug 26. View Abstract
  11. Imaging and anesthesia protocol optimization in sedated clinical resting state fMRI. AJNR Am J Neuroradiol. 2024 Aug 12. View Abstract
  12. White matter tract crossing and bottleneck regions in the fetal brain. bioRxiv. 2024 Jul 22. View Abstract
  13. Anatomically constrained tractography of the fetal brain. Neuroimage. 2024 Aug 15; 297:120723. View Abstract
  14. Free-Breathing High-Resolution, Swap-Free, and Motion-Corrected Water/Fat Separation in Pediatric Abdominal MRI. Invest Radiol. 2024 Dec 01; 59(12):805-812. View Abstract
  15. Abnormality of Early White Matter Development in Tuberous Sclerosis Complex and Autism Spectrum Disorder: Longitudinal Analysis of Diffusion Tensor Imaging Measures. J Child Neurol. 2024 May; 39(5-6):178-189. View Abstract
  16. A detailed spatio-temporal atlas of the white matter tracts for the fetal brain. bioRxiv. 2024 Apr 27. View Abstract
  17. Publisher Correction to: Morphological Features of Language Regions in Individuals with Tuberous Sclerosis Complex. J Autism Dev Disord. 2024 Mar; 54(3):1232. View Abstract
  18. Morphometric and clinical comparison of MRI-based synthetic CT to conventional CT of the hip in children. Pediatr Radiol. 2024 05; 54(5):743-757. View Abstract
  19. Divergent growth of the transient brain compartments in fetuses with nonsyndromic isolated clefts involving the primary and secondary palate. Cereb Cortex. 2024 01 31; 34(2). View Abstract
  20. Characterizing microstructural development in the fetal brain using diffusion MRI from 23 to 36 weeks of gestation. Cereb Cortex. 2024 01 14; 34(1). View Abstract
  21. Rapid motion estimation and correction using self-encoded FID navigators in 3D radial MRI. Magn Reson Med. 2024 Mar; 91(3):1057-1066. View Abstract
  22. Reduced evoked cortical beta and gamma activity and neuronal synchronization in succinic semialdehyde dehydrogenase deficiency, a disorder of ?-aminobutyric acid metabolism. Brain Commun. 2023; 5(6):fcad291. View Abstract
  23. Population Atlas Analysis of Emerging Brain Structural Connections in the Human Fetus. J Magn Reson Imaging. 2024 Jul; 60(1):152-160. View Abstract
  24. Atypical fetal brain development in fetuses with non-syndromic isolated musculoskeletal birth defects (niMSBDs). Cereb Cortex. 2023 10 14; 33(21):10793-10801. View Abstract
  25. Improved myelin water fraction mapping with deep neural networks using synthetically generated 3D data. Med Image Anal. 2024 Jan; 91:102966. View Abstract
  26. Use of CT and MR imaging in radiation therapy planning of imaging-diagnosed canine intracranial meningioma achieves better tumor coverage than CT alone. Vet Radiol Ultrasound. 2023 Jul; 64(4):775-783. View Abstract
  27. Heterogeneous growth of the insula shapes the human brain. Proc Natl Acad Sci U S A. 2023 06 13; 120(24):e2220200120. View Abstract
  28. Comparison of fMRI language laterality with and without sedation in pediatric epilepsy. Neuroimage Clin. 2023; 38:103448. View Abstract
  29. Morphological Features of Language Regions in Individuals with Tuberous Sclerosis Complex. J Autism Dev Disord. 2024 Aug; 54(8):3155-3175. View Abstract
  30. Toward evaluation of multiresolution cortical thickness estimation with FreeSurfer, MaCRUISE, and BrainSuite. Cereb Cortex. 2023 04 25; 33(9):5082-5096. View Abstract
  31. Abnormal prenatal brain development in Chiari II malformation. Front Neuroanat. 2023; 17:1116948. View Abstract
  32. Image data and computational grids for computing brain shift and solving the electrocorticography forward problem. Data Brief. 2023 Jun; 48:109122. View Abstract
  33. SlicerCBM: automatic framework for biomechanical analysis of the brain. Int J Comput Assist Radiol Surg. 2023 Oct; 18(10):1925-1940. View Abstract
  34. Epilepsy Severity Is Associated With Head Circumference and Growth Rate in Infants With Tuberous Sclerosis Complex. Pediatr Neurol. 2023 07; 144:26-32. View Abstract
  35. Brain growth in fetuses with congenital diaphragmatic hernia. J Neuroimaging. 2023 Jul-Aug; 33(4):617-624. View Abstract
  36. Abnormal development of transient fetal zones in mild isolated fetal ventriculomegaly. Cereb Cortex. 2023 02 07; 33(4):1130-1139. View Abstract
  37. Integrated response analysis of pediatric low-grade gliomas during and after targeted therapy treatment. Neurooncol Adv. 2023 Jan-Dec; 5(1):vdac182. View Abstract
  38. Tubers Affecting the Fusiform Face Area Are Associated with Autism Diagnosis. Ann Neurol. 2023 03; 93(3):577-590. View Abstract
  39. Detailed anatomic segmentations of a fetal brain diffusion tensor imaging atlas between 23 and 30?weeks of gestation. Hum Brain Mapp. 2023 03; 44(4):1593-1602. View Abstract
  40. Publisher Correction: Brain charts for the human lifespan. Nature. 2022 Oct; 610(7931):E6. View Abstract
  41. Patient-specific solution of the electrocorticography forward problem in deforming brain. Neuroimage. 2022 11; 263:119649. View Abstract
  42. Real-time shimming with FID navigators. Magn Reson Med. 2022 12; 88(6):2548-2563. View Abstract
  43. Evaluation of white matter microstructure in pediatric onset multiple sclerosis with diffusion compartment imaging. J Neuroimaging. 2022 11; 32(6):1098-1108. View Abstract
  44. Associations of Macronutrient Intake Determined by Point-of-Care Human Milk Analysis with Brain Development among very Preterm Infants. Children (Basel). 2022 Jun 29; 9(7). View Abstract
  45. Diffusion-derived parameters in lesions, peri-lesion and normal-appearing white matter in multiple sclerosis using tensor, kurtosis and fixel-based analysis. J Cereb Blood Flow Metab. 2022 Nov; 42(11):2095-2106. View Abstract
  46. Limited utility of structural MRI to identify the epileptogenic zone in young children with tuberous sclerosis. J Neuroimaging. 2022 09; 32(5):991-1000. View Abstract
  47. Scan-Specific Generative Neural Network for MRI Super-Resolution Reconstruction. IEEE Trans Med Imaging. 2022 06; 41(6):1383-1399. View Abstract
  48. Deep learning of birth-related infant clavicle fractures: a potential virtual consultant for fracture dating. Pediatr Radiol. 2022 10; 52(11):2206-2214. View Abstract
  49. Brain charts for the human lifespan. Nature. 2022 04; 604(7906):525-533. View Abstract
  50. Fetal Brain Volume Predicts Neurodevelopment in Congenital Heart Disease. Circulation. 2022 04 12; 145(15):1108-1119. View Abstract
  51. Associations of body composition with regional brain volumes and white matter microstructure in very preterm infants. Arch Dis Child Fetal Neonatal Ed. 2022 Sep; 107(5):533-538. View Abstract
  52. Reducing the Effects of Motion Artifacts in fMRI: A Structured Matrix Completion Approach. IEEE Trans Med Imaging. 2022 01; 41(1):172-185. View Abstract
  53. Normal Growth, Sexual Dimorphism, and Lateral Asymmetries at Fetal Brain MRI. Radiology. 2022 04; 303(1):162-170. View Abstract
  54. An MRI method for parcellating the human striatum into matrix and striosome compartments in vivo. Neuroimage. 2022 02 01; 246:118714. View Abstract
  55. Gradient-Guided Isotropic MRI Reconstruction from Anisotropic Acquisitions. IEEE Trans Comput Imaging. 2021; 7:1240-1253. View Abstract
  56. Self-supervised IVIM DWI parameter estimation with a physics based forward model. Magn Reson Med. 2022 02; 87(2):904-914. View Abstract
  57. MRI Super-Resolution Through Generative Degradation Learning. Med Image Comput Comput Assist Interv. 2021 Sep-Oct; 12906:430-440. View Abstract
  58. Super-resolution reconstruction of T2-weighted thick-slice neonatal brain MRI scans. J Neuroimaging. 2022 01; 32(1):68-79. View Abstract
  59. Spatiotemporal changes in diffusivity and anisotropy in fetal brain tractography. Hum Brain Mapp. 2021 12 01; 42(17):5771-5784. View Abstract
  60. Deep learning-based parameter estimation in fetal diffusion-weighted MRI. Neuroimage. 2021 11; 243:118482. View Abstract
  61. Association between Quantitative MR Markers of Cortical Evolving Organization and Gene Expression during Human Prenatal Brain Development. Cereb Cortex. 2021 07 05; 31(8):3610-3621. View Abstract
  62. Learning to estimate the fiber orientation distribution function from diffusion-weighted MRI. Neuroimage. 2021 10 01; 239:118316. View Abstract
  63. Physics-based iterative reconstruction for dual-source and flying focal spot computed tomography. Med Phys. 2021 Jul; 48(7):3595-3613. View Abstract
  64. Fast and High-Resolution Neonatal Brain MRI Through Super-Resolution Reconstruction From Acquisitions With Variable Slice Selection Direction. Front Neurosci. 2021; 15:636268. View Abstract
  65. Matched neurofeedback during fMRI differentially activates reward-related circuits in active and sham groups. J Neuroimaging. 2021 09; 31(5):947-955. View Abstract
  66. A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. Med Image Anal. 2021 08; 72:102129. View Abstract
  67. Transfer learning in medical image segmentation: New insights from analysis of the dynamics of model parameters and learned representations. Artif Intell Med. 2021 06; 116:102078. View Abstract
  68. Free-breathing radial stack-of-stars three-dimensional Dixon gradient echo sequence in abdominal magnetic resonance imaging in sedated pediatric patients. Pediatr Radiol. 2021 Aug; 51(9):1645-1653. View Abstract
  69. Magnetic Resonance Imaging (MRI) and Spectroscopy in Succinic Semialdehyde Dehydrogenase Deficiency. J Child Neurol. 2021 11; 36(13-14):1162-1168. View Abstract
  70. Magic DIAMOND: Multi-fascicle diffusion compartment imaging with tensor distribution modeling and tensor-valued diffusion encoding. Med Image Anal. 2021 05; 70:101988. View Abstract
  71. Tuber Locations Associated with Infantile Spasms Map to a Common Brain Network. Ann Neurol. 2021 04; 89(4):726-739. View Abstract
  72. Free induction decay navigator motion metrics for prediction of diagnostic image quality in pediatric MRI. Magn Reson Med. 2021 06; 85(6):3169-3181. View Abstract
  73. Tractography of the Cerebellar Peduncles in Second- and Third-Trimester Fetuses. AJNR Am J Neuroradiol. 2021 01; 42(1):194-200. View Abstract
  74. Retrospective Distortion and Motion Correction for Free-Breathing DW-MRI of the Kidneys Using Dual-Echo EPI and Slice-to-Volume Registration. J Magn Reson Imaging. 2021 05; 53(5):1432-1443. View Abstract
  75. Regional Brain Growth Trajectories in Fetuses with Congenital Heart Disease. Ann Neurol. 2021 01; 89(1):143-157. View Abstract
  76. Modeling dynamic radial contrast enhanced MRI with linear time invariant systems for motion correction in quantitative assessment of kidney function. Med Image Anal. 2021 01; 67:101880. View Abstract
  77. Learning a Gradient Guidance for Spatially Isotropic MRI Super-Resolution Reconstruction. Med Image Comput Comput Assist Interv. 2020 Oct; 12262:136-146. View Abstract
  78. Dynamic distortion correction for functional MRI using FID navigators. Magn Reson Med. 2021 03; 85(3):1294-1307. View Abstract
  79. SLIMM: Slice localization integrated MRI monitoring. Neuroimage. 2020 12; 223:117280. View Abstract
  80. Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results. Neuroimage. 2020 11 01; 221:117128. View Abstract
  81. Association of Isolated Congenital Heart Disease with Fetal Brain Maturation. AJNR Am J Neuroradiol. 2020 08; 41(8):1525-1531. View Abstract
  82. Spatiotemporal Differences in the Regional Cortical Plate and Subplate Volume Growth during Fetal Development. Cereb Cortex. 2020 06 30; 30(8):4438-4453. View Abstract
  83. Myofiber organization in the failing systemic right ventricle. J Cardiovasc Magn Reson. 2020 06 29; 22(1):49. View Abstract
  84. Deep learning with noisy labels: Exploring techniques and remedies in medical image analysis. Med Image Anal. 2020 10; 65:101759. View Abstract
  85. LEARNING TO DETECT BRAIN LESIONS FROM NOISY ANNOTATIONS. Proc IEEE Int Symp Biomed Imaging. 2020 Apr; 2020:1910-1914. View Abstract
  86. In vivo characterization of emerging white matter microstructure in the fetal brain in the third trimester. Hum Brain Mapp. 2020 08 15; 41(12):3177-3185. View Abstract
  87. A structural brain network of genetic vulnerability to psychiatric illness. Mol Psychiatry. 2021 06; 26(6):2089-2100. View Abstract
  88. Simultaneous Motion and Distortion Correction Using Dual-Echo Diffusion-Weighted MRI. J Neuroimaging. 2020 05; 30(3):276-285. View Abstract
  89. Correction to: Prospective pediatric study comparing glomerular filtration rate estimates based on motion-robust dynamic contrast-enhanced magnetic resonance imaging and serum creatinine (eGFR) to 99mTc DTPA. Pediatr Radiol. 2020 May; 50(5):755-756. View Abstract
  90. The Connectivity Fingerprint of the Fusiform Gyrus Captures the Risk of Developing Autism in Infants with Tuberous Sclerosis Complex. Cereb Cortex. 2020 04 14; 30(4):2199-2214. View Abstract
  91. Quantitative In vivo MRI Assessment of Structural Asymmetries and Sexual Dimorphism of Transient Fetal Compartments in the Human Brain. Cereb Cortex. 2020 03 14; 30(3):1752-1767. View Abstract
  92. Diffusion Tensor Imaging Abnormalities in the Uncinate Fasciculus and Inferior Longitudinal Fasciculus in Phelan-McDermid Syndrome. Pediatr Neurol. 2020 05; 106:24-31. View Abstract
  93. Prospective pediatric study comparing glomerular filtration rate estimates based on motion-robust dynamic contrast-enhanced magnetic resonance imaging and serum creatinine (eGFR) to 99mTc DTPA. Pediatr Radiol. 2020 05; 50(5):698-705. View Abstract
  94. Lesion-Constrained Electrical Source Imaging: A Novel Approach in Epilepsy Surgery for Tuberous Sclerosis Complex. J Clin Neurophysiol. 2020 Jan; 37(1):79-86. View Abstract
  95. Early white matter development is abnormal in tuberous sclerosis complex patients who develop autism spectrum disorder. J Neurodev Disord. 2019 12 16; 11(1):36. View Abstract
  96. Bulk motion-compensated DCE-MRI for functional imaging of kidneys in newborns. J Magn Reson Imaging. 2020 07; 52(1):207-216. View Abstract
  97. Feed and wrap magnetic resonance urography provides anatomic and functional imaging in infants without anesthesia. J Pediatr Urol. 2020 Feb; 16(1):116-120. View Abstract
  98. Motion-corrected foetal cardiac MRI. Nat Biomed Eng. 2019 11; 3(11):852-854. View Abstract
  99. Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior. Med Image Comput Comput Assist Interv. 2019 Oct; 11766:3-11. View Abstract
  100. Fetal Echoplanar Imaging: Promises and Challenges. Top Magn Reson Imaging. 2019 Oct; 28(5):245-254. View Abstract
  101. Extra-axonal restricted diffusion as an in-vivo marker of reactive microglia. Sci Rep. 2019 09 25; 9(1):13874. View Abstract
  102. Biomechanical modeling and computer simulation of the brain during neurosurgery. Int J Numer Method Biomed Eng. 2019 10; 35(10):e3250. View Abstract
  103. Rapid measurement and correction of spatiotemporal B0 field changes using FID navigators and a multi-channel reference image. Magn Reson Med. 2020 02; 83(2):575-589. View Abstract
  104. Retrospective correction of head motion using measurements from an electromagnetic tracker. Magn Reson Med. 2020 02; 83(2):427-437. View Abstract
  105. Early-Emerging Sulcal Patterns Are Atypical in Fetuses with Congenital Heart Disease. Cereb Cortex. 2019 07 22; 29(8):3605-3616. View Abstract
  106. Reproducibility of Structural and Diffusion Tensor Imaging in the TACERN Multi-Center Study. Front Integr Neurosci. 2019; 13:24. View Abstract
  107. Resting-State fMRI Networks in Children with Tuberous Sclerosis Complex. J Neuroimaging. 2019 11; 29(6):750-759. View Abstract
  108. White matter mean diffusivity correlates with myelination in tuberous sclerosis complex. Ann Clin Transl Neurol. 2019 07; 6(7):1178-1190. View Abstract
  109. Suite of meshless algorithms for accurate computation of soft tissue deformation for surgical simulation. Med Image Anal. 2019 08; 56:152-171. View Abstract
  110. Intelligent Labeling Based on Fisher Information for Medical Image Segmentation Using Deep Learning. IEEE Trans Med Imaging. 2019 11; 38(11):2642-2653. View Abstract
  111. Perioperatively Inhaled Hydrogen Gas Diminishes Neurologic Injury Following Experimental Circulatory Arrest in Swine. JACC Basic Transl Sci. 2019 Apr; 4(2):176-187. View Abstract
  112. Multi-Resolution Graph Based Volumetric Cortical Basis Functions From Local Anatomic Features. IEEE Trans Biomed Eng. 2019 12; 66(12):3381-3392. View Abstract
  113. A registration method for improving quantitative assessment in probabilistic diffusion tractography. Neuroimage. 2019 04 01; 189:288-306. View Abstract
  114. Asymmetric Loss Functions and Deep Densely Connected Networks for Highly Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection. IEEE Access. 2019; 7:721-1735. View Abstract
  115. Motion-robust diffusion compartment imaging using simultaneous multi-slice acquisition. Magn Reson Med. 2019 05; 81(5):3314-3329. View Abstract
  116. Curved planar reformatting and convolutional neural network-based segmentation of the small bowel for visualization and quantitative assessment of pediatric Crohn's disease from MRI. J Magn Reson Imaging. 2019 06; 49(6):1565-1576. View Abstract
  117. Longitudinal Effects of Everolimus on White Matter Diffusion in Tuberous Sclerosis Complex. Pediatr Neurol. 2019 01; 90:24-30. View Abstract
  118. Corpus Callosum White Matter Diffusivity Reflects Cumulative Neurological Comorbidity in Tuberous Sclerosis Complex. Cereb Cortex. 2018 10 01; 28(10):3665-3672. View Abstract
  119. Towards microstructure fingerprinting: Estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations. Neuroimage. 2019 01 01; 184:964-980. View Abstract
  120. Volumetric Analysis of the Basal Ganglia and Cerebellar Structures in Patients with Phelan-McDermid Syndrome. Pediatr Neurol. 2019 01; 90:37-43. View Abstract
  121. Active Deep Learning with Fisher Information for Patch-wise Semantic Segmentation. Deep Learn Med Image Anal Multimodal Learn Clin Decis Support (2018). 2018 Sep; 11045:83-91. View Abstract
  122. Semi-Automated Extraction of Crohns Disease MR Imaging Markers using a 3D Residual CNN with Distance Prior. Deep Learn Med Image Anal Multimodal Learn Clin Decis Support (2018). 2018 Sep; 11045:218-226. View Abstract
  123. Tract-Specific Group Analysis in Fetal Cohorts Using in utero Diffusion Tensor Imaging. Med Image Comput Comput Assist Interv. 2018 Sep; 11072:28-35. View Abstract
  124. Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure. Sci Rep. 2018 09 12; 8(1):13650. View Abstract
  125. Fetal brain growth portrayed by a spatiotemporal diffusion tensor MRI atlas computed from in utero images. Neuroimage. 2019 01 15; 185:593-608. View Abstract
  126. Head motion measurement and correction using FID navigators. Magn Reson Med. 2019 01; 81(1):258-274. View Abstract
  127. Changes in neonatal regional brain volume associated with preterm birth and perinatal factors. Neuroimage. 2019 01 15; 185:654-663. View Abstract
  128. Presurgical language fMRI: Technical practices in epilepsy surgical planning. Hum Brain Mapp. 2018 10; 39(10):4032-4042. View Abstract
  129. AUTOMATIC RENAL SEGMENTATION IN DCE-MRI USING CONVOLUTIONAL NEURAL NETWORKS. Proc IEEE Int Symp Biomed Imaging. 2018 Apr; 2018:1534-1537. View Abstract
  130. Fetal Neuropathology in Zika Virus-Infected Pregnant Female Rhesus Monkeys. Cell. 2018 05 17; 173(5):1111-1122.e10. View Abstract
  131. Cerebellar volume as an imaging marker of development in infants with tuberous sclerosis complex. Neurology. 2018 04 24; 90(17):e1493-e1500. View Abstract
  132. Presurgical language fMRI: Clinical practices and patient outcomes in epilepsy surgical planning. Hum Brain Mapp. 2018 07; 39(7):2777-2785. View Abstract
  133. Differential Rates of Perinatal Maturation of Human Primary and Nonprimary Auditory Cortex. eNeuro. 2018 Jan-Feb; 5(1). View Abstract
  134. Reproducibility of Brain MRI Segmentation Algorithms: Empirical Comparison of Local MAP PSTAPLE, FreeSurfer, and FSL-FIRST. J Neuroimaging. 2018 03; 28(2):162-172. View Abstract
  135. Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices. Mol Imaging Reconstr Anal Mov Body Organs Stroke Imaging Treat (2017). 2017; 10555:75-85. View Abstract
  136. Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI. Neuroimage. 2017 11 15; 162:65-72. View Abstract
  137. Assessing the validity of the approximation of diffusion-weighted-MRI signals from crossing fascicles by sums of signals from single fascicles. Magn Reson Med. 2018 04; 79(4):2332-2345. View Abstract
  138. Localization of stereo-electroencephalography signals using a finite difference complete electrode model. Annu Int Conf IEEE Eng Med Biol Soc. 2017 Jul; 2017:3600-3603. View Abstract
  139. Diffusion MRI microstructure models with in vivo human brain Connectome data: results from a multi-group comparison. NMR Biomed. 2017 Sep; 30(9). View Abstract
  140. Motion-robust parameter estimation in abdominal diffusion-weighted MRI by simultaneous image registration and model estimation. Med Image Anal. 2017 Jul; 39:124-132. View Abstract
  141. Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis. Neuroimage. 2017 08 01; 156:475-488. View Abstract
  142. Automated template-based brain localization and extraction for fetal brain MRI reconstruction. Neuroimage. 2017 07 15; 155:460-472. View Abstract
  143. Heavy Prenatal Alcohol Exposure is Related to Smaller Corpus Callosum in Newborn MRI Scans. Alcohol Clin Exp Res. 2017 May; 41(5):965-975. View Abstract
  144. Both 3-T dGEMRIC and Acetabular-Femoral T2 Difference May Detect Cartilage Damage at the Chondrolabral Junction. Clin Orthop Relat Res. 2017 Apr; 475(4):1058-1065. View Abstract
  145. A normative spatiotemporal MRI atlas of the fetal brain for automatic segmentation and analysis of early brain growth. Sci Rep. 2017 03 28; 7(1):476. View Abstract
  146. Reduced thalamic volume in patients with Electrical Status Epilepticus in Sleep. Epilepsy Res. 2017 02; 130:74-80. View Abstract
  147. A New Sparse Representation Framework for Reconstruction of an Isotropic High Spatial Resolution MR Volume From Orthogonal Anisotropic Resolution Scans. IEEE Trans Med Imaging. 2017 05; 36(5):1182-1193. View Abstract
  148. Longitudinal multiple sclerosis lesion segmentation: Resource and challenge. Neuroimage. 2017 03 01; 148:77-102. View Abstract
  149. Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions. IEEE Trans Med Imaging. 2017 05; 36(5):1106-1115. View Abstract
  150. White Matter Volume Predicts Language Development in Congenital Heart Disease. J Pediatr. 2017 02; 181:42-48.e2. View Abstract
  151. A new neonatal cortical and subcortical brain atlas: the Melbourne Children's Regional Infant Brain (M-CRIB) atlas. Neuroimage. 2017 02 15; 147:841-851. View Abstract
  152. Motion-Robust Reconstruction based on Simultaneous Multi-Slice Registration for Diffusion-Weighted MRI of Moving Subjects. Med Image Comput Comput Assist Interv. 2016 Oct; 9902:544-552. View Abstract
  153. Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking. IEEE Trans Med Imaging. 2016 10; 35(10):2258-2269. View Abstract
  154. Active delineation of Meyer's loop using oriented priors through MAGNEtic tractography (MAGNET). Hum Brain Mapp. 2017 01; 38(1):509-527. View Abstract
  155. Hippocampal Formation Maldevelopment and Sudden Unexpected Death across the Pediatric Age Spectrum. J Neuropathol Exp Neurol. 2016 Oct; 75(10):981-997. View Abstract
  156. Evaluation of motion and its effect on brain magnetic resonance image quality in children. Pediatr Radiol. 2016 Nov; 46(12):1728-1735. View Abstract
  157. Dynamic Electrical Source Imaging (DESI) of Seizures and Interictal Epileptic Discharges Without Ensemble Averaging. IEEE Trans Med Imaging. 2017 01; 36(1):98-110. View Abstract
  158. Evaluation of Numerical Techniques for Solving the Current Injection Problem in Biological Tissues. Proc IEEE Int Symp Biomed Imaging. 2016 Apr; 2016:876-880. View Abstract
  159. Fetal lung apparent diffusion coefficient measurement using diffusion-weighted MRI at 3 Tesla: Correlation with gestational age. J Magn Reson Imaging. 2016 12; 44(6):1650-1655. View Abstract
  160. Extensions to a manifold learning framework for time-series analysis on dynamic manifolds in bioelectric signals. Phys Rev E. 2016 04; 93(4):042218. View Abstract
  161. Motion-robust diffusion-weighted brain MRI reconstruction through slice-level registration-based motion tracking. IEEE Trans Med Imaging. 2016 Apr 20. View Abstract
  162. Spatially-constrained probability distribution model of incoherent motion (SPIM) for abdominal diffusion-weighted MRI. Med Image Anal. 2016 08; 32:173-83. View Abstract
  163. 3D Super-Resolution Motion-Corrected MRI: Validation of Fetal Posterior Fossa Measurements. J Neuroimaging. 2016 09; 26(5):539-44. View Abstract
  164. Planar dGEMRIC Maps May Aid Imaging Assessment of Cartilage Damage in Femoroacetabular Impingement. Clin Orthop Relat Res. 2016 Feb; 474(2):467-78. View Abstract
  165. Super-resolution reconstruction in frequency, image, and wavelet domains to reduce through-plane partial voluming in MRI. Med Phys. 2015 Dec; 42(12):6919-32. View Abstract
  166. Analytic quantification of bias and variance of coil sensitivity profile estimators for improved image reconstruction in MRI. Med Image Comput Comput Assist Interv. 2015 Oct; 9350:684-691. View Abstract
  167. Fast myelin water fraction estimation using 2D multislice CPMG. Magn Reson Med. 2016 10; 76(4):1301-13. View Abstract
  168. Improved fidelity of brain microstructure mapping from single-shell diffusion MRI. Med Image Anal. 2015 Dec; 26(1):268-86. View Abstract
  169. Tubers are neither static nor discrete: Evidence from serial diffusion tensor imaging. Neurology. 2015 Nov 03; 85(18):1536-45. View Abstract
  170. Characterizing brain tissue by assessment of the distribution of anisotropic microstructural environments in diffusion-compartment imaging (DIAMOND). Magn Reson Med. 2016 09; 76(3):963-77. View Abstract
  171. Brain Perfusion Is Increased at Term in the White Matter of Very Preterm Newborns and Newborns with Congenital Heart Disease: Does this Reflect Activated Angiogenesis? Neuropediatrics. 2015 Oct; 46(5):344-51. View Abstract
  172. Single Anisotropic 3-D MR Image Upsampling via Overcomplete Dictionary Trained From In-Plane High Resolution Slices. IEEE J Biomed Health Inform. 2016 11; 20(6):1552-1561. View Abstract
  173. Optimal MAP Parameters Estimation in STAPLE Using Local Intensity Similarity Information. IEEE J Biomed Health Inform. 2015 Sep; 19(5):1589-97. View Abstract
  174. Spatially constrained incoherent motion method improves diffusion-weighted MRI signal decay analysis in the liver and spleen. Med Phys. 2015 Apr; 42(4):1895-903. View Abstract
  175. COMBINED DELAY AND GRAPH EMBEDDING OF EPILEPTIC DISCHARGES IN EEG REVEALS COMPLEX AND RECURRENT NONLINEAR DYNAMICS. Proc IEEE Int Symp Biomed Imaging. 2015 Apr; 2015:347-350. View Abstract
  176. Altered Structural Brain Networks in Tuberous Sclerosis Complex. Cereb Cortex. 2016 May; 26(5):2046-58. View Abstract
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  178. Increased Brain Perfusion Persists over the First Month of Life in Term Asphyxiated Newborns Treated with Hypothermia: Does it Reflect Activated Angiogenesis? Transl Stroke Res. 2015 Jun; 6(3):224-33. View Abstract
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  191. A fully Bayesian inference framework for population studies of the brain microstructure. Med Image Comput Comput Assist Interv. 2014; 17(Pt 1):25-32. View Abstract
  192. Construction of a deformable spatiotemporal MRI atlas of the fetal brain: evaluation of similarity metrics and deformation models. Med Image Comput Comput Assist Interv. 2014; 17(Pt 2):292-9. View Abstract
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  210. Estimation of a multi-fascicle model from single B-value data with a population-informed prior. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):695-702. View Abstract
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  212. Improved multi B-value diffusion-weighted MRI of the body by simultaneous model estimation and image reconstruction (SMEIR). Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):1-8. View Abstract
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  221. Estimating a reference standard segmentation with spatially varying performance parameters: local MAP STAPLE. IEEE Trans Med Imaging. 2012 Aug; 31(8):1593-606. View Abstract
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  223. Optimizing hippocampal segmentation in infants utilizing MRI post-acquisition processing. Neuroinformatics. 2012 Apr; 10(2):173-80. View Abstract
  224. Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly. Neuroimage. 2012 Apr 15; 60(3):1819-31. View Abstract
  225. NIDCAP improves brain function and structure in preterm infants with severe intrauterine growth restriction. J Perinatol. 2012 Oct; 32(10):797-803. View Abstract
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  228. Reliable assessment of perfusivity and diffusivity from diffusion imaging of the body. Med Image Comput Comput Assist Interv. 2012; 15(Pt 1):1-9. View Abstract
  229. Estimation of the prior distribution of ground truth in the STAPLE algorithm: an empirical Bayesian approach. Med Image Comput Comput Assist Interv. 2012; 15(Pt 1):593-600. View Abstract
  230. Registration and analysis of white matter group differences with a multi-fiber model. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):313-20. View Abstract
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  239. Segmentations of MRI images of the female pelvic floor: a study of inter- and intra-reader reliability. J Magn Reson Imaging. 2011 Mar; 33(3):684-91. View Abstract
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  245. Motion-robust MRI through real-time motion tracking and retrospective super-resolution volume reconstruction. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:5722-5. View Abstract
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  254. Morphological characteristics of brain tumors causing seizures. Arch Neurol. 2010 Mar; 67(3):336-42. View Abstract
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  257. Incorporating priors on expert performance parameters for segmentation validation and label fusion: a maximum a posteriori STAPLE. Med Image Comput Comput Assist Interv. 2010; 13(Pt 3):25-32. View Abstract
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  261. Automatic segmentation and quantitative analysis of the articular cartilages from magnetic resonance images of the knee. IEEE Trans Med Imaging. 2010 Jan; 29(1):55-64. View Abstract
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  267. Real-time prediction of brain shift using nonlinear finite element algorithms. Med Image Comput Comput Assist Interv. 2009; 12(Pt 2):300-7. View Abstract
  268. Using Frankenstein's creature paradigm to build a patient specific atlas. Med Image Comput Comput Assist Interv. 2009; 12(Pt 2):993-1000. View Abstract
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  275. Validation of image segmentation by estimating rater bias and variance. Philos Trans A Math Phys Eng Sci. 2008 Jul 13; 366(1874):2361-75. View Abstract
  276. Primary cortical folding in the human newborn: an early marker of later functional development. Brain. 2008 Aug; 131(Pt 8):2028-41. View Abstract
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  284. Detection of DTI white matter abnormalities in multiple sclerosis patients. Med Image Comput Comput Assist Interv. 2008; 11(Pt 1):975-82. View Abstract
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  286. Racial differences in pelvic floor muscle thickness in asymptomatic nulliparas as seen on magnetic resonance imaging-based three-dimensional color thickness mapping. Am J Obstet Gynecol. 2007 Dec; 197(6):625.e1-4. View Abstract
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  292. Automatic segmentation of the bone and extraction of the bone-cartilage interface from magnetic resonance images of the knee. Phys Med Biol. 2007 Mar 21; 52(6):1617-31. View Abstract
  293. Probabilistic clustering and quantitative analysis of white matter fiber tracts. Inf Process Med Imaging. 2007; 20:372-83. View Abstract
  294. Automatic segmentation of articular cartilage in magnetic resonance images of the knee. Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):186-94. View Abstract
  295. Alignment of large image series using cubic B-splines tessellation: application to transmission electron microscopy data. Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):710-7. View Abstract
  296. Non-rigid registration of pre-procedural MR images with intra-procedural unenhanced CT images for improved targeting of tumors during liver radiofrequency ablations. Med Image Comput Comput Assist Interv. 2007; 10(Pt 2):969-77. View Abstract
  297. Automatic Segmentation of Articular Cartilage in Magnetic Resonance Images of the Knee. 2007. View Abstract
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  300. Non-rigid Registration of Pre-procedural MR Images with Intra-procedural Unenhanced CT Images for Improved Targeting of Tumors During Liver Radiofrequency Ablations. 2007. View Abstract
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  307. Reduced occipital regional volumes at term predict impaired visual function in early childhood in very low birth weight infants. Invest Ophthalmol Vis Sci. 2006 Aug; 47(8):3366-73. View Abstract
  308. Novel image processing techniques to better understand white matter disruption in multiple sclerosis. Autoimmun Rev. 2006 Oct; 5(8):544-8. View Abstract
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  310. Automated segmentation of multiple sclerosis lesion subtypes with multichannel MRI. Neuroimage. 2006 Sep; 32(3):1205-15. View Abstract
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  312. Patient-specific model of brain deformation: application to medical image registration. J Biomech. 2007; 40(4):919-29. View Abstract
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  314. Validation of image segmentation by estimating rater bias and variance. Med Image Comput Comput Assist Interv. 2006; 9(Pt 2):839-47. View Abstract
  315. 3D histological reconstruction of fiber tracts and direct comparison with diffusion tensor MRI tractography. Med Image Comput Comput Assist Interv. 2006; 9(Pt 1):109-16. View Abstract
  316. Highly accurate segmentation of brain tissue and subcortical gray matter from newborn MRI. Med Image Comput Comput Assist Interv. 2006; 9(Pt 1):199-206. View Abstract
  317. On-Demand High Performance Computing: Image Guided Neuro-Surgery Feasibility Study. 2006. View Abstract
  318. 3D Histological Reconstruction of Fiber Tracts and Direct Comparison with Diffusion Tensor MRI Tractography. 2006. View Abstract
  319. Automatic Segmentation of the Knee Bones using 3D Active Shape Models. 2006. View Abstract
  320. Imaging and visual analysis - Toward real-time image guided neurosurgery using distributed and grid computing. 2006. View Abstract
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  328. Reproducibility of functional MR imaging: preliminary results of prospective multi-institutional study performed by Biomedical Informatics Research Network. Radiology. 2005 Dec; 237(3):781-9. View Abstract
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  330. An EM algorithm for shape classification based on level sets. Med Image Anal. 2005 Oct; 9(5):491-502. View Abstract
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  332. Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation. IEEE Trans Med Imaging. 2005 Oct; 24(10):1334-46. View Abstract
  333. Talairach-based parcellation of neonatal brain magnetic resonance imaging data: validation of a new approach. J Neuroimaging. 2005 Oct; 15(4):305-14. View Abstract
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  335. Three-dimensional assessment of MR imaging-guided percutaneous cryotherapy using multi-performer repeated segmentations: the value of supervised learning. Acad Radiol. 2005 Apr; 12(4):444-50. View Abstract
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  339. An in vivo MRI study of prefrontal cortical complexity in first-episode psychosis. Am J Psychiatry. 2005 Jan; 162(1):65-70. View Abstract
  340. Diffusion tensor magnetic resonance imaging in multiple sclerosis. J Neuroimaging. 2005; 15(4 Suppl):68S-81S. View Abstract
  341. Automated atlas-based clustering of white matter fiber tracts from DTMRI. Med Image Comput Comput Assist Interv. 2005; 8(Pt 1):188-95. View Abstract
  342. Combining classifiers using their receiver operating characteristics and maximum likelihood estimation. Med Image Comput Comput Assist Interv. 2005; 8(Pt 1):506-14. View Abstract
  343. Hybrid formulation of the model-based non-rigid registration problem to improve accuracy and robustness. Med Image Comput Comput Assist Interv. 2005; 8(Pt 2):295-302. View Abstract
  344. Brain shift computation using a fully nonlinear biomechanical model. Med Image Comput Comput Assist Interv. 2005; 8(Pt 2):583-90. View Abstract
  345. Spectral clustering algorithms for ultrasound image segmentation. Med Image Comput Comput Assist Interv. 2005; 8(Pt 2):862-9. View Abstract
  346. An improved articulated registration method for neck images. Conf Proc IEEE Eng Med Biol Soc. 2005; 2005:7668-71. View Abstract
  347. Medical Image Analysis for Image Guided Therapy. 2005. View Abstract
  348. 3D Statistical Shape Models to Embed Spatial Relationship Information. 2005. View Abstract
  349. Spectral Clustering Algorithms for Ultrasound Image Segmentation. 2005. View Abstract
  350. Studying anatomy and disease in medical images using shape analysis. Leondes CT, editor. Medical Imaging Systems Technology: Methods in Diagnosis Optimization. 2005; 4:329-361. View Abstract
  351. Automated Atlas-Based Clustering of White Matter Fiber Tracts from DTMRI. 2005. View Abstract
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  353. Combining Classifiers Using Their Receiver Operating Characteristics and Maximum Likelihood Estimation. 2005. View Abstract
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  355. A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery. 2005. View Abstract
  356. Brain Shift Computation Using a Fully Nonlinear Biomechanical Model. 2005. View Abstract
  357. Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation. 2005. View Abstract
  358. brid Formulation of the Model-Based Non-rigid Registration Problem to Improve Accuracy and Robustness. 2005. View Abstract
  359. Automatic Initialization of 3D Deformable Models for Cartilage Segmentation. 2005. View Abstract
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  361. Three-dimensional assessment of MRI-guided percutaneous cryotherapy of liver metastases. AJR Am J Roentgenol. 2004 Sep; 183(3):707-12. View Abstract
  362. Levator ani thickness variations in symptomatic and asymptomatic women using magnetic resonance-based 3-dimensional color mapping. Am J Obstet Gynecol. 2004 Sep; 191(3):856-61. View Abstract
  363. Coupling Statistical Segmentation and PCA Shape Modeling. Med Image Comput Comput Assist Interv. 2004 Sep; 3216:151-159. View Abstract
  364. Has your patient's multiple sclerosis lesion burden or brain atrophy actually changed? Mult Scler. 2004 Aug; 10(4):402-6. View Abstract
  365. Application of spherical harmonics derived space rotation invariant indices to the analysis of multiple sclerosis lesions' geometry by MRI. Magn Reson Imaging. 2004 Jul; 22(6):815-25. View Abstract
  366. Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation. IEEE Trans Med Imaging. 2004 Jul; 23(7):903-21. View Abstract
  367. Early alteration of structural and functional brain development in premature infants born with intrauterine growth restriction. Pediatr Res. 2004 Jul; 56(1):132-8. View Abstract
  368. Three validation metrics for automated probabilistic image segmentation of brain tumours. Stat Med. 2004 Apr 30; 23(8):1259-82. View Abstract
  369. Improved watershed transform for medical image segmentation using prior information. IEEE Trans Med Imaging. 2004 Apr; 23(4):447-58. View Abstract
  370. Early experience alters brain function and structure. Pediatrics. 2004 Apr; 113(4):846-57. View Abstract
  371. Statistical validation of image segmentation quality based on a spatial overlap index. Acad Radiol. 2004 Feb; 11(2):178-89. View Abstract
  372. Prefrontal cortical thickness in first-episode psychosis: a magnetic resonance imaging study. Biol Psychiatry. 2004 Jan 15; 55(2):131-40. View Abstract
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  374. Dense Deformation Field Estimation for Brain Intra-Operative Images Registration. SPIE Medical imaging: Image Processing. 2004. View Abstract
  375. Normalization of Joint Image-Intensity Statistics in MRI using the Kullback-Leibler Divergence. International Symposium on Biomedical Imaging. 2004. View Abstract
  376. Coupling Statistical Segmentation and PCA Shape Modeling. 2004; 151-159. View Abstract
  377. Automatic Optimization of Segmentation Algorithms Through Simultaneous Truth and Performance Level Estimation (STAPLE). 2004; 274-282. View Abstract
  378. Medical Image Analysis Software. 2004. View Abstract
  379. Modelling Surgical Cuts, Retractions, and Resections via Extended Finite Element Method. 2004; 311-318. View Abstract
  380. Level Set Methods in an EM Framework for Shape Classification and Estimation. 2004; 1-9. View Abstract
  381. Statistical validation based on parametric receiver operating characteristic analysis of continuous classification data. Acad Radiol. 2003 Dec; 10(12):1359-68. View Abstract
  382. Assessment of the impact of the removal of cerebrospinal fluid on cerebral tissue volumes by advanced volumetric 3D-MRI in posthaemorrhagic hydrocephalus in a premature infant. J Neurol Neurosurg Psychiatry. 2003 May; 74(5):658-60. View Abstract
  383. Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans. IEEE Trans Biomed Eng. 2003 Mar; 50(3):383-90. View Abstract
  384. Planning, simulation and assistance with intraoperative MRI. Min Invas Ther and Allied Technol. 2003; 12(1-2):59-64. View Abstract
  385. Geostatistical Medical Image Registration. MICCAI 2003: Sixth International Conference on Medical Image Computing and Computer- Assisted Intervention. 2003; 894 – 901. View Abstract
  386. Diffusion Tensor and Functional MRI Fusion with Anatomical MRI for Image-Guided Neurosurgery. MICCAI 2003: Sixth International Conference on Medical Image Computing and Computer- Assisted Intervention. 2003; 407–415. View Abstract
  387. Capturing Brain Deformation. International Symposium on Surgical Simulation and Soft Tissue Modeling. 2003; 2673:203–217. View Abstract
  388. Serial registration of intraoperative MR images of the brain. Med Image Anal. 2002 Dec; 6(4):337-59. View Abstract
  389. Incorporating Non-rigid Registration into Expectation Maximization Algorithm to Segment MR Images. Med Image Comput Comput Assist Interv. 2002 Sep; 2488:564-571. View Abstract
  390. Quantitative MR imaging assessment of prostate gland deformation before and during MR imaging-guided brachytherapy. Acad Radiol. 2002 Aug; 9(8):906-12. View Abstract
  391. Real-Time Registration of Volumetric Brain MRI by Biomechanical Simulation of Deformation during Image Guided Neurosurgery. Comput Visual Sci. 2002; 5(1):3-11. View Abstract
  392. Nonrigid registration of 3D tensor medical data. Med Image Anal. 2002 Jun; 6(2):143-61. View Abstract
  393. Quantitative analysis of MRI signal abnormalities of brain white matter with high reproducibility and accuracy. J Magn Reson Imaging. 2002 Feb; 15(2):203-9. View Abstract
  394. Tumor detection by virtual cystoscopy with color mapping of bladder wall thickness. J Urol. 2002 Feb; 167(2 Pt 1):559-62. View Abstract
  395. Older people with impaired mobility have specific loci of periventricular abnormality on MRI. Neurology. 2002 Jan 08; 58(1):48-55. View Abstract
  396. Statistical Validation of Automated Probabilistic Segmentation Against Composite Latent Expert Ground Truth in MR Imaging of Brain Tumors. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 315–322. View Abstract
  397. Automated Labeling of the Cortical Surface Using a Deformable Multiresolution Mesh. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 451–458. View Abstract
  398. Deformable Registration of DTMRI Data Based On Transformation Invariant Tensor Characteristics. International Symposium on Biomedical Imaging: Macro to Nano. 2002; 1-4. View Abstract
  399. Simultaneous Validation of Image Segmentation and Assessment of Expert Quality. International Symposium on Biomedical Imaging: Macro to Nano. 2002; 1–4. View Abstract
  400. Validation of Image Segmentation and Expert Quality with an Expectation-Maximization Algorithm. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 298–306. View Abstract
  401. Incorporating Non-rigid Registration into Expectation Maximization Algorithm to Segment MR Images. MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2002; 564–571. View Abstract
  402. Advanced Nonrigid Registration Algorithms for Image Fusion. Toga AW, Mazziotta JC. Brain Mapping: The Methods. 2002; 661-690. View Abstract
  403. Evaluation of three-dimensional finite element-based deformable registration of pre- and intraoperative prostate imaging. Med Phys. 2001 Dec; 28(12):2551-60. View Abstract
  404. Registration of 3-D intraoperative MR images of the brain using a finite-element biomechanical model. IEEE Trans Med Imaging. 2001 Dec; 20(12):1384-97. View Abstract
  405. Serial intraoperative magnetic resonance imaging of brain shift. Neurosurgery. 2001 Apr; 48(4):787-97; discussion 797-8. View Abstract
  406. Impaired cerebral cortical gray matter growth after treatment with dexamethasone for neonatal chronic lung disease. Pediatrics. 2001 Feb; 107(2):217-21. View Abstract
  407. Automated segmentation of MR images of brain tumors. Radiology. 2001 Feb; 218(2):586-91. View Abstract
  408. Regional magnetic resonance imaging lesion burden and cognitive function in multiple sclerosis: a longitudinal study. Arch Neurol. 2001 Jan; 58(1):115-21. View Abstract
  409. A Novel Nonrigid Registration Algorithm and Applications. MICCAI 2001: Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2001; 923–931. View Abstract
  410. A Binary Entropy Measure to Assess Nonrigid Registration Algorithms. MICCAI 2001: Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2001; 266–274. View Abstract
  411. Unsupervised and Adaptive Segmentation of Multispectral 3D Magnetic Resonance Images of Human Brain: a Generic Approach. MICCAI 2001: Fourth International Conference on Medical Image Computing and Computer-Assisted Intervention. 2001; 1067–1074. View Abstract
  412. Three-dimensional optical flow method for measurement of volumetric brain deformation from intraoperative MR images. J Comput Assist Tomogr. 2000 Jul-Aug; 24(4):531-8. View Abstract
  413. Virtual CT cystoscopy: color mapping of bladder wall thickness. Invest Radiol. 2000 May; 35(5):331-4. View Abstract
  414. An image processing strategy for the quantification and visualization of exercise-induced muscle MRI signal enhancement. J Magn Reson Imaging. 2000 May; 11(5):525-31. View Abstract
  415. White matter abnormalities in mobility-impaired older persons. Neurology. 2000 Mar 28; 54(6):1277-83. View Abstract
  416. Adaptive, template moderated, spatially varying statistical classification. Med Image Anal. 2000 Mar; 4(1):43-55. View Abstract
  417. Registration of 3D Intraoperative MR Images of the Brain Using a Finite Element Biomechanical Model. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 19–28. View Abstract
  418. Intraoperative Visualization. Mazziotta JC, Toga AW, Frackowiak RSJ. Brain Mapping: The Disorders. 2000; 107-129. View Abstract
  419. Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery. SC 2000: High Performance Networking and Computing Conference. 2000; 1–16. View Abstract
  420. Nonrigid Registration of 3D Scalar, Vector and Tensor Medical Data. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 541–550. View Abstract
  421. Simulation of Corticospinal Tract Displacement in Patients with Brain Tumors. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 9–18. View Abstract
  422. Intraoperative Segmentation and Nonrigid Registration For Image Guided Therapy. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 176–185. View Abstract
  423. Deformable Modeling for Characterizing Biomedical Shape Changes. DGCI2000: Discrete Geometry for Computer Imagery. 2000; 1953(Lecture Notes in Computer Scie):235–248. View Abstract
  424. Pre- and Intra-operative Planning and Simulation of Percutaneous Tumor Ablation. MICCAI 2000: Third International Conference on Medical Robotics, Imaging And Computer Assisted Surgery. 2000; 317–326. View Abstract
  425. Periventricular white matter injury in the premature infant is followed by reduced cerebral cortical gray matter volume at term. Ann Neurol. 1999 Nov; 46(5):755-60. View Abstract
  426. Quantitative follow-up of patients with multiple sclerosis using MRI: reproducibility. J Magn Reson Imaging. 1999 Apr; 9(4):509-18. View Abstract
  427. 3D Image Matching Using a Finite Element Based Elastic Deformation Model. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 202–209. View Abstract
  428. Fractional Segmentation of White Matter. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 62–71. View Abstract
  429. A volumetric optical flow method for measurement of brain deformation from intraoperative magnetic resonance images. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 928–935. View Abstract
  430. Segmentation of MRI of meningiomas and low grade gliomas. MICCAI 99: Second International Conference on Medical Image Computing and Computer-Assisted Intervention. 1999; 1–10. View Abstract
  431. Proton Magnetic Resonance Imaging of Exercised Muscle. Pandolf KB, Takeda N, Singal PK. Adaptation Biology and Medicine. 1999; 170-185. View Abstract
  432. Nonlinear Registration and Template Driven Segmentation. Toga AW, editor. Brain Warping. 1999; 67-84. View Abstract
  433. A High Performance Computing Approach to the Registration of Medical Imaging Data. Parallel Computing. 1998; 24(9-10):1345-1368. View Abstract
  434. Quantitative magnetic resonance imaging of brain development in premature and mature newborns. Ann Neurol. 1998 Feb; 43(2):224-35. View Abstract
  435. Tensor controlled local structure enhancement of CT images for bone segmentation. MICCAI 98: First International Conference on Medical Image Computing and Computer-Assisted Intervention. 1998; 1205–1212. View Abstract
  436. Real-Time Image Segmentation for Image-Guided Surgery. SC 1998: High Performance Networking and Computing Conference. 1998; 1–14. View Abstract
  437. Multimodality Deformable Registration of Pre- and Intraoperative Images for MRI-Guided Brain Surgery. MICCAI 98: First International Conference on Medical Image Computing and Computer-Assisted Intervention. 1998; 1067–1074. View Abstract
  438. Adaptive Template Moderated Spatially Varying Statistical Classification. MICCAI 98: First International Conference on Medical Image Computing and Computer-Assisted Intervention. 1998; 231–238. View Abstract
  439. An automated registration algorithm for measuring MRI subcortical brain structures. Neuroimage. 1997 Jul; 6(1):13-25. View Abstract
  440. Segmentation of Magnetic Resonance Images of the Brain. 1997. View Abstract
  441. Fast k-NN Classification for Multichannel Image Data. Pattern Recognition Letters. 1996; 17(7):713-721. View Abstract
  442. Automatic identification of Grey Matter Structures from MRI to Improve the Segmentation of White Matter Lesions. MRCAS’95 Second International Symposium on Medical Robotics and Computer Assisted Surgery. 1995; 140–147. View Abstract
  443. Automatic identification of gray matter structures from MRI to improve the segmentation of white matter lesions. J Image Guid Surg. 1995; 1(6):326-38. View Abstract
  444. Validation of Automatic Classification Strategies for the Measurement of Subcortical Hyperintensities on T-weighted Magnetic Resonance Images. S/CAR 94 Symposium for Computer Assisted Radiology. 1994; 319–324. View Abstract
  445. Visualising Cerebral Vasculature: Imaging Limitations from 2D and 3D Data. SPIE Medical Imaging 1994. Image Capture, Formatting and Display. 1994; 2164:74–82. View Abstract

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